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PUBLICATIONS
* authors contributed equally
PAPERS
Peer-Reviewed:
Makeig, S.*, Kothe,
C.*, Mullen, T.*, Bigdely-Shamlo,
N., Zhang, Z., Kreutz-Delgado, K (2012). Evolving Signal Processing for
Brain-Computer Interface Design. To appear in: IEEE Centennial Celebration Special
Issue- Neuroergonomics/BCI. IEEE Transactions in Signal Processing
Makeig, S., Leslie, G., Mullen, T., Sarma, D., Bigdely-Shamlo, N., and Kothe, C (2011) Brain
Dynamics of Affective Engagement in a Musical Emotion BCI. Lecture
Notes in Computer Science 6975, Springer
Mullen, T., Akalin Acar, Z., Worrell, G., Makeig, S. (2011) Modeling Cortical
Source Dynamics and Interactions During Seizure. IEEE Engineering in
Biology and Medicine.
Leslie, G.* and Mullen, T.*, (2011) MoodMixer: EEG-based Collaborative
Sonification. Proceedings of the International Conference on New Interfaces
for Musical Expression. Ed. A.R. Jensenius, A. Tveit, R.I. Godøy, D.
Overholt. ISBN: 978-82-991841-7-5
Mullen, T., Warp, R., Jansch, A (2011) Minding the (Transatlantic) Gap: An
Internet-Enabled Acoustic Brain-Computer Music Interface. Proceedings of the
International Conference on New Interfaces for Musical Expression. Ed. A.R.
Jensenius, A. Tveit, R.I. Godøy, Dan Overholt. ISBN: 978-82-991841-7-5.
Delorme, A., Mullen, T., Kothe C., Akalin Acar, Z., Bigdely
Shamlo, N., Vankov, A., Makeig, S. (2011) EEGLAB, SIFT, NFT, BCILAB, and
ERICA: New tools for advanced EEG/MEG processing. Computational
Intelligence and Neuroscience vol. 2011, Article ID 130714, 12 pages.
Published
Reports (not peer-reviewed):
Mullen,
T.R., (2010) The
Source Information Flow Toolbox (SIFT): An Electrophysiological Information
Flow Toolbox for EEGLAB. Theoretical Handbook and User Manual. Masters Project.
www.sccn.ucsd.edu/wiki/SIFT.
Mullen, T., Huang, Q., Reich, J. Towards Ubiquitous
Brain-Aware Computing: A Preliminary EEG Study (2007). PARC technical
report (pdf)
In Review
Bigdely-Shamlo, N., Mullen, T., Kreutz-Delgado,
K., Makeig, S., Measure Projection: A Probabilistic Alternative to EEG
Independent Component Clustering. NeuroImage
Kang, J.K.*, Mullen,
T.*, Makeig, S. Differentiation of EEG patterns with nonconvulsive status
epilepticus and triphasic wave using wavelet analysis. Epilepsia
In Final Preparation
Mullen, T., Delorme, A., Makeig, S. The Source
Information Flow Toolbox: An Electrophysiological Information Flow Toolbox for
EEGLAB. Journal of Neuroscience Methods
Mullen, T.*, Talbott, W.* Probabilistic classification of EEG signals
using Symbolic Aggregate Approximation and Latent Dirichlet Allocation. NIPS
2011
Mullen, T., Akalin Acar, Z., Palmer, J.,
Worrell, G, Makeig, S (2011). Analysis of neuronal source dynamics and
connectivity during seizure using adaptive vector autoregressive models, sparse
bayesian learning, independent component analysis, and electrocorticography. International
Cognitive Science Conference XI, Mallorca, Spain
Thompson, W., Mullen, T., Makeig, S., (2011) A
Bayesian spatiotemporal model for multi-subject EEG source dynamics and
effective connectivity. International
Cognitive Science Conference XI, Mallorca, Spain
2010
Mullen, T., Makeig, S. (2010) An electrophysiological
information flow toolbox for EEGLAB. Society for Neuroscience
Conference, San Diego, CA
Thompson, W., Ombao H., Mullen, T., Onton., J., Makeig, S. (2010) A
bayesian model for EEG frequency-domain functional connectivity. Human
Brain Mapping. Barcelona, Spain
Thompson, WK, Mullen, T., Motta, G., Ombao, H., (2010)
Spatiotemporal Factor Analysis of EEG Evolutionary Latent Sources. Human
Brain Mapping, Barcelona, Spain.
Mullen, T., Onton, J., Delorme, A., Thompson, W., Makeig,
S. (2010) Analysis and visualization of theta-band information flow
dynamics in an ERN-producing task. Human Brain Mapping. Barcelona,
Spain and Sloan-Swartz Annual Meeting. New Haven, CT
2009
Mullen T,* Swann N,* Tandon N, Ellmore
T, DiSano M, Dreyer S, Aron AR. (2009) Using Granger-causal techniques and
intracranial EEG to examine directed information flow in a cortical network for
stopping action. Poster. Society for Neuroscience Conference. Chicago,
IL.
Velu, P., Hammon,
P., Mullen, T., de Sa, V. (2009) Dissociating visual response
and motor preparation for reach prediction from EEG. Poster. Society
for Neuroscience Conference. Chicago, IL.
2008
Bastos, A.,* Mullen, T.,* Canolty, R.,
Pasley, B., Knight, R., Freeman, R. (2008)
SSVEP-based Single-Trial Classification of Attention. Poster. Cognitive
Neuroscience Society Conference, San Francisco, CA.
2007
Fuhrmann, G.,* Mullen T.,* Suppiah, S., Soltani,
M., Edwards E., Canolty, R., Sarang, D., Kirsch, H., Barbaro, N., Knight, R.T. (2007) Functional Connectivity and
Information Flow in the Human Brain during Language Processing: Evidence from
ECoG data. Poster. Cognitive Neuroscience Society Conference, New
York, N.Y.
2006
Mullen, T., Huang, Q., Reich, J. (2006) Project Halo: Enabling Ubiquitous Brain-Aware
Computing. Poster. PARC Annual Poster Session. Palo
Alto, CA.
Mullen, T., Bolton, J., Jian, S., Martinez , A. (2006)
NEEDster: Need-based Exchange Enhancement Device. Prototype Exhibition,
Talk, and Poster. UC Berkeley HCI Poster Session
2005
Padilla,
M.L., Mullen T.R., & Knight R.T. (2005) Differential
contributions of lateral and orbitofrontal cortex to preparatory attention and
action monitoring. Symposium Talk & Poster. Society for
Neuroscience Conference, Washington D.C.
SYMPOSIA and other invited TALKS
Mullen, T. Lecture series on Advanced EEG Signal Processing (Nov 30 - Dec 2, 2011). Baque Center for Cognition Brain and Language. Donostia/San Sebastian, Basque Autonomous Community, Spain.
Mullen, T., Akalin Acar, Z., Worrell, G., Makeig, S. (2011) Modeling Cortical Source Dynamics and Interactions During Seizure. Oral Presentation. IEEE Engineering in Biology and Medicine. Boston, MA.
Mullen, T.R., Akalin Acar, Z., Palmer, J. (2011) Spatiotemporal Dynamics and Interactions in Intracranial EEG. 2011 Sloan-Swartz Annual Meeting. HHMI Janelia Farm Research Campus. Ashburn, VA, USA.
Mullen, T.R. (2011) Modeling multivariate EEG source information flow using adaptive vector autoregressive models. Symposium Talk. Symposium on EEG advanced signal processing. Aspet, France
Mullen, T.R. (2011) Time-Frequency Analysis, Information Flow, and Granger-Causality. Lecture. Thirteenth International EEGLAB workshop. Aspet, France.
Mullen, T.R. (2011) Analyzing oscillatory EEG/ECoG source dynamics and interactions using the Source Information Flow Toolbox (SIFT). Fourteenth International EEGLAB workshop. ICON XI. Mallorca, Spain.
Mullen, T.R. (2010) Modeling Distributed Brain Network Dynamics. Invited Lecture. Twelfth International EEGLAB workshop. UC San Diego, La Jolla, CA, USA (video)
Mullen, T.R. (2010) Information Flow Analysis in EEG. Invited Symposium Talk. Society for Psychophysiological Research. Portland, OR, USA.
Mullen, T.R. (2010) Modeling effective connectivity by measuring EEG information flow. Invited Lecture. Tenth International EEGLAB workshop. Jyvaskyla, Finland.
ACKNOWLEDGEMENTS
(published papers which I've edited or contributed analysis)
Bin, G.; Gao, X.; Wang, Y.; Hong, B.; Gao, S., (2009) VEP-based brain-computer interfaces: time, frequency, and code modulations [Research Frontier]. Computational Intelligence Magazine, IEEE , vol.4, no.4, pp.22-26
Padilla, M., Hale, L., Wood, R., & Knight, R. T. (2006) Lapses in a prefrontal-extrastriate preparatory attention network predict mistakes. Journal of Cognitive Neuroscience.18:1477-1487. (Pubmed Link)
Fuhrmann Alpert, G., Sun, F. T., Handwerker, D., D'Esposito, M., & Knight, R. T. (2007) Information Analysis of Event-Related BOLD Responses. NeuroImage. 34 (4) 1545-1561. (Pubmed Link)
PATENTS
Mullen, T. and Huang, Q. (2007) Brainwave-Facilitated Presenter Feedback Mechanism. USPTO Patent Application 20090143695 (patent pending)
Mullen, T. and Huang, Q. (2007) Brainwave-Aware Sleep Management. United States Patent 7689274
SELECTED TERM RESEARCH PROJECTS
(minimum grade: A)
Mullen, T., Talbott, W. (2008) Probabilistic classification of EEG signals using Symbolic Aggregate Approximation and Latent Dirichlet Allocation. CS250B : Statistical Machine Learning (Prof. Charles Elkan). UC San Diego (pdf)
Mullen, T. (2007) Functional Connectivity and Information Flow in ECoG Data: A Linear Approach. STAT153: Time-Series Analysis (Prof. David Brillinger). UC Berkeley (pdf)
Mullen, T., Bolton, J., Jian, S., Martinez , A. (2006) NEEDster: Need-based Exchange Enhancement Device. Prototype Exhibition, Talk, and Poster. CS160 : User Interface Design (Prof. John Canny). UC Berkeley (jpg)
Mullen, T. (2006) Dynamic Identification of Focal Cluster ROIs Using Time-lagged Mutual Information. CS182: Neural Basis of Thought and Language (Prof. Srini Narayanan). UC Berkeley (pdf)
Mullen, T. (2006) ICA-based Identification of Overlapping Spatial Clusters in ECoG Data. VS298: Neural Computation (Prof. Bruno Olshausen). UC Berkeley (pdf)
OTHER
Reviewer for:
Journal of Computational Neuroscience (ad hoc)
Neural Computation (ad hoc) Journal of Neuroscience (ad hoc)
NeuroImage
Brain Connectivity IEEE Transactions in Biomedical Engineering
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